# Table created from the following input table: ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome.tsv
# Used command:  ./dependencies/extract_subtable.py -v -i ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome.tsv -o ./output/genome_analysis/16S_counts_per_genome/16S_counts_per_genome_quality_filtered.tsv --subset_rows_by row_names --wildcards_file ./output/genome_analysis/genome_stats/quality_filtered_genomes_for_16S_GCN_analysis/assembly_and_checkM_stats_filtered.tsv --match_wildcards_exactly --column_names_are_in last_comment_line --row_names_are_in_column genome --save_output_row_names_under_column genome --save_output_column_names_in last_comment_line --include_comments_in_output -f --verbose_prefix '  '
# Generated on: 2018.01.08 15:01:03
#
# genome	16S_gene_count
GCF_000006175.1	2
GCF_000006805.1	1
GCF_000007005.1	1
GCF_000007065.1	3
GCF_000007305.1	1
GCF_000007345.1	3
GCF_000008265.1	1
GCF_000008645.1	2
GCF_000008665.1	1
GCF_000009185.1	2
GCF_000009965.1	1
GCF_000011085.1	3
GCF_000011105.1	1
GCF_000011185.1	1
GCF_000011205.1	1
GCF_000011585.1	3
GCF_000012285.1	1
GCF_000012545.1	4
GCF_000013445.1	4
GCF_000013725.1	3
GCF_000015205.1	1
GCF_000015225.1	1
GCF_000015765.1	3
GCF_000015825.1	1
GCF_000015945.1	1
GCF_000016125.1	3
GCF_000016525.1	2
GCF_000016605.1	1
GCF_000017165.1	4
GCF_000017185.1	2
GCF_000017225.1	3
GCF_000017945.1	1
GCF_000018305.1	1
GCF_000018365.1	1
GCF_000018485.1	3
GCF_000020905.1	1
GCF_000021965.1	3
GCF_000022205.1	3
GCF_000022365.1	1
GCF_000022385.1	1
GCF_000022405.1	1
GCF_000022425.1	1
GCF_000022465.1	1
GCF_000022485.1	1
GCF_000022545.1	1
GCF_000023945.1	1
GCF_000023965.1	3
GCF_000023985.1	2
GCF_000024185.1	2
GCF_000024625.1	2
GCF_000024745.1	1
GCF_000025285.1	1
GCF_000025325.1	3
GCF_000025505.1	1
GCF_000025525.1	2
GCF_000025625.1	3
GCF_000025665.1	1
GCF_000025685.1	2
GCF_000025865.1	3
GCF_000063445.1	3
GCF_000069025.1	1
GCF_000091665.1	2
GCF_000092185.1	1
GCF_000092305.1	2
GCF_000092465.1	1
GCF_000144915.1	1
GCF_000145295.1	2
GCF_000148385.1	1
GCF_000151105.2	1
GCF_000151205.2	1
GCF_000152265.2	1
GCF_000166095.1	2
GCF_000172995.2	2
GCF_000179575.2	2
GCF_000186365.1	1
GCF_000189555.1	1
GCF_000190315.1	1
GCF_000191585.1	2
GCF_000193375.1	1
GCF_000194625.1	1
GCF_000195895.1	3
GCF_000195915.1	1
GCF_000195935.2	1
GCF_000196895.1	1
GCF_000204415.1	2
GCF_000204925.1	1
GCF_000211475.1	1
GCF_000213215.1	1
GCF_000214415.1	2
GCF_000214725.1	3
GCF_000215995.1	1
GCF_000217715.1	3
GCF_000217995.1	3
GCF_000220645.1	2
GCF_000221185.1	1
GCF_000223395.1	1
GCF_000223905.1	3
GCF_000226975.2	3
GCF_000230715.2	3
GCF_000230735.2	3
GCF_000230955.2	1
GCF_000231015.2	1
GCF_000235565.1	1
GCF_000237865.1	2
GCF_000246985.2	1
GCF_000251105.1	2
GCF_000253055.1	1
GCF_000263735.1	1
GCF_000264495.1	1
GCF_000265525.1	1
GCF_000275605.1	1
GCF_000281695.1	3
GCF_000299395.1	1
GCF_000304355.2	1
GCF_000306725.1	3
GCF_000306765.2	2
GCF_000317795.1	1
GCF_000327485.1	1
GCF_000327505.1	1
GCF_000328665.1	2
GCF_000328685.1	4
GCF_000338775.1	1
GCF_000340315.1	1
GCF_000350305.1	1
GCF_000364745.1	1
GCF_000385565.1	1
GCF_000403645.1	1
GCF_000404165.1	3
GCF_000446015.1	1
GCF_000470655.1	1
GCF_000499765.1	2
GCF_000504565.1	3
GCF_000517625.1	2
GCF_000585495.1	1
GCF_000725425.1	2
GCF_000734035.1	1
GCF_000739065.1	2
GCF_000762265.1	2
GCF_000769655.1	1
GCF_000789255.1	1
GCF_000812185.1	1
GCF_000813245.1	1
GCF_000816105.1	1
GCF_000827835.1	3
GCF_000828575.1	2
GCF_000953115.1	2
GCF_000956175.1	1
GCF_000968355.1	1
GCF_000968395.1	1
GCF_000968435.1	1
GCF_000969885.1	3
GCF_000969905.1	3
GCF_000969945.1	3
GCF_000969965.1	3
GCF_000969985.1	3
GCF_000970005.1	3
GCF_000970025.1	3
GCF_000970045.1	3
GCF_000970065.1	3
GCF_000970085.1	3
GCF_000970145.1	3
GCF_000970165.1	3
GCF_000970185.1	3
GCF_000970205.1	3
GCF_000970225.1	3
GCF_000970245.1	3
GCF_000970265.1	3
GCF_000970285.1	3
GCF_000970305.1	3
GCF_000970325.1	3
GCF_000993805.1	1
GCF_001006045.1	1
GCF_001027005.1	3
GCF_001190965.1	2
GCF_001266655.1	1
GCF_001266675.1	1
GCF_001266695.1	1
GCF_001266715.1	1
GCF_001266735.1	1
GCF_001458655.1	2
GCF_001484685.1	1
GCF_001488575.1	1
GCF_001548675.1	2
GCF_001563245.1	2
GCF_001577775.1	1
GCF_001592435.1	1
GCF_001647085.1	1
GCF_001719125.1	1
GCF_001767315.1	1
GCF_001886615.1	4
GCF_001971705.1	2
GCF_002078355.1	1
GCF_002156705.1	2
GCF_002156965.1	1
GCF_002197185.1	1
GCF_002214165.1	1
GCF_002214365.1	1
GCF_002214385.1	1
GCF_002214465.1	1
GCF_002214485.1	1
GCF_002214505.1	1
GCF_002214525.1	1
GCF_002214545.1	1
GCF_002214565.1	1
GCF_002214585.1	1
GCF_002214605.1	1
GCF_002215405.1	1
GCF_002215445.1	1
GCF_002215485.1	1
GCF_002215525.1	1
GCF_002215565.1	1
GCF_002355635.1	2
GCF_002355655.1	2
GCF_002813085.1	2
GCF_002813655.1	2
GCF_002813675.1	2
GCF_002813695.1	2
GCF_002844335.1	2
GCF_900012635.1	1
GCF_900036045.1	1
GCF_900079115.1	1
GCF_900079125.1	1
GCF_900090055.1	1
GCF_900095295.1	3
GCF_900095815.1	2
GCF_900198835.1	1
GCF_000006605.1	3
GCF_000006625.1	2
GCF_000006645.1	7
GCF_000006685.1	2
GCF_000006725.1	2
GCF_000006745.1	8
GCF_000006765.1	4
GCF_000006785.2	6
GCF_000006825.1	6
GCF_000006845.1	4
GCF_000006865.1	6
GCF_000006905.1	2
GCF_000006925.2	7
GCF_000006945.2	7
GCF_000006985.1	2
GCF_000007085.1	4
GCF_000007105.1	3
GCF_000007125.1	3
GCF_000007165.1	2
GCF_000007205.1	1
GCF_000007245.1	2
GCF_000007265.1	7
GCF_000007285.1	6
GCF_000007325.1	5
GCF_000007365.1	1
GCF_000007425.1	6
GCF_000007445.1	7
GCF_000007465.2	5
GCF_000007485.1	1
GCF_000007505.1	3
GCF_000007525.1	4
GCF_000007545.1	7
GCF_000007565.2	7
GCF_000007585.1	4
GCF_000007605.1	1
GCF_000007625.1	6
GCF_000007645.1	5
GCF_000007665.1	1
GCF_000007685.1	2
GCF_000007705.1	8
GCF_000007725.1	1
GCF_000007745.1	6
GCF_000007785.1	4
GCF_000007805.1	5
GCF_000007845.1	11
GCF_000007865.1	1
GCF_000007885.1	7
GCF_000007905.1	1
GCF_000007925.1	1
GCF_000007945.1	6
GCF_000007985.2	2
GCF_000008005.1	12
GCF_000008025.1	1
GCF_000008065.1	6
GCF_000008105.1	7
GCF_000008125.1	2
GCF_000008145.1	3
GCF_000008165.1	11
GCF_000008185.1	2
GCF_000008205.1	1
GCF_000008225.1	1
GCF_000008245.1	2
GCF_000008285.1	6
GCF_000008305.1	2
GCF_000008325.1	2
GCF_000008345.1	3
GCF_000008365.1	1
GCF_000008385.1	1
GCF_000008405.1	1
GCF_000008425.1	7
GCF_000008445.1	11
GCF_000008465.1	4
GCF_000008485.1	3
GCF_000008505.1	14
GCF_000008525.1	2
GCF_000008565.1	3
GCF_000008585.1	1
GCF_000008685.2	1
GCF_000008725.1	2
GCF_000008745.1	1
GCF_000008785.1	2
GCF_000008865.1	7
GCF_000008885.1	2
GCF_000008925.1	7
GCF_000008945.1	4
GCF_000008985.1	3
GCF_000009005.1	5
GCF_000009025.1	1
GCF_000009045.1	10
GCF_000009065.1	6
GCF_000009105.1	4
GCF_000009125.1	4
GCF_000009145.1	1
GCF_000009165.1	2
GCF_000009225.2	5
GCF_000009245.1	3
GCF_000009265.1	3
GCF_000009285.1	5
GCF_000009325.1	3
GCF_000009345.1	7
GCF_000009365.1	3
GCF_000009385.1	6
GCF_000009425.1	6
GCF_000009465.1	4
GCF_000009485.1	6
GCF_000009505.1	7
GCF_000009525.1	7
GCF_000009545.1	5
GCF_000009565.1	7
GCF_000009585.1	6
GCF_000009605.1	1
GCF_000009645.1	5
GCF_000009665.1	5
GCF_000009685.1	10
GCF_000009705.1	4
GCF_000009725.1	2
GCF_000009745.1	9
GCF_000009765.2	6
GCF_000009785.1	9
GCF_000009825.1	7
GCF_000009845.1	2
GCF_000009865.1	5
GCF_000009885.1	8
GCF_000009905.1	6
GCF_000009925.1	6
GCF_000009945.1	1
GCF_000009985.1	2
GCF_000010005.1	6
GCF_000010025.1	2
GCF_000010065.1	2
GCF_000010085.1	7
GCF_000010105.1	5
GCF_000010125.1	6
GCF_000010165.1	15
GCF_000010185.1	4
GCF_000010225.1	6
GCF_000010245.2	7
GCF_000010265.1	7
GCF_000010285.1	3
GCF_000010325.1	3
GCF_000010385.1	7
GCF_000010405.1	1
GCF_000010425.1	5
GCF_000010445.1	5
GCF_000010465.1	5
GCF_000010485.1	7
GCF_000010505.1	4
GCF_000010525.1	3
GCF_000010545.1	5
GCF_000010605.1	6
GCF_000010645.1	2
GCF_000010665.1	3
GCF_000010685.1	1
GCF_000010705.1	5
GCF_000010745.1	7
GCF_000010765.1	7
GCF_000010785.1	1
GCF_000010825.1	5
GCF_000010845.1	5
GCF_000010865.1	5
GCF_000010885.1	5
GCF_000010905.1	5
GCF_000010925.1	5
GCF_000010945.1	4
GCF_000010965.1	5
GCF_000011025.1	3
GCF_000011045.1	5
GCF_000011065.1	5
GCF_000011165.1	1
GCF_000011245.1	7
GCF_000011265.1	6
GCF_000011285.1	5
GCF_000011305.1	5
GCF_000011325.1	6
GCF_000011345.1	1
GCF_000011385.1	1
GCF_000011405.1	3
GCF_000011465.1	1
GCF_000011485.1	2
GCF_000011505.1	5
GCF_000011525.1	6
GCF_000011545.1	4
GCF_000011605.1	7
GCF_000011625.1	13
GCF_000011645.1	7
GCF_000011665.1	6
GCF_000011685.1	4
GCF_000011705.1	4
GCF_000011725.1	2
GCF_000011745.1	1
GCF_000011765.3	6
GCF_000011785.1	5
GCF_000011805.1	12
GCF_000011825.1	6
GCF_000011845.1	6
GCF_000011885.1	7
GCF_000011905.1	1
GCF_000011925.1	6
GCF_000011965.2	3
GCF_000011985.1	4
GCF_000012005.1	7
GCF_000012045.1	6
GCF_000012105.1	2
GCF_000012125.1	2
GCF_000012145.1	1
GCF_000012165.1	6
GCF_000012185.1	6
GCF_000012205.1	5
GCF_000012225.1	2
GCF_000012245.1	5
GCF_000012265.1	5
GCF_000012305.1	4
GCF_000012345.1	1
GCF_000012365.1	4
GCF_000012385.1	1
GCF_000012405.1	4
GCF_000012425.1	4
GCF_000012465.1	1
GCF_000012485.1	2
GCF_000012505.1	2
GCF_000012525.1	2
GCF_000012565.1	1
GCF_000012585.1	1
GCF_000012605.1	3
GCF_000012625.1	2
GCF_000012645.1	1
GCF_000012665.1	4
GCF_000012705.1	7
GCF_000012725.1	1
GCF_000012765.1	2
GCF_000012785.1	4
GCF_000012805.1	2
GCF_000012825.1	7
GCF_000012845.1	7
GCF_000012865.1	4
GCF_000012885.1	2
GCF_000012925.1	2
GCF_000012945.1	6
GCF_000013005.1	1
GCF_000013025.1	1
GCF_000013065.1	13
GCF_000013085.1	4
GCF_000013105.1	1
GCF_000013165.1	1
GCF_000013185.1	2
GCF_000013225.1	2
GCF_000013245.1	2
GCF_000013265.1	7
GCF_000013285.1	8
GCF_000013305.1	7
GCF_000013325.1	3
GCF_000013365.1	1
GCF_000013385.1	2
GCF_000013465.1	5
GCF_000013485.1	6
GCF_000013505.1	6
GCF_000013545.1	6
GCF_000013565.1	1
GCF_000013665.1	2
GCF_000013685.1	2
GCF_000013705.1	2
GCF_000013745.1	2
GCF_000013765.1	8
GCF_000013785.1	4
GCF_000013805.1	7
GCF_000013825.1	7
GCF_000013865.1	1
GCF_000013885.1	1
GCF_000013905.1	4
GCF_000013945.1	2
GCF_000013965.1	2
GCF_000013985.1	1
GCF_000014005.1	1
GCF_000014025.1	5
GCF_000014045.1	1
GCF_000014065.1	5
GCF_000014085.1	6
GCF_000014105.1	4
GCF_000014125.1	10
GCF_000014145.1	3
GCF_000014165.1	2
GCF_000014225.1	5
GCF_000014285.2	3
GCF_000014345.1	1
GCF_000014385.1	2
GCF_000014405.1	9
GCF_000014425.1	6
GCF_000014465.1	5
GCF_000014485.1	6
GCF_000014505.1	5
GCF_000014525.1	5
GCF_000014585.1	2
GCF_000014605.1	3
GCF_000014625.1	4
GCF_000014645.1	3
GCF_000014665.1	9
GCF_000014685.1	9
GCF_000014705.1	9
GCF_000014725.1	3
GCF_000014745.1	2
GCF_000014765.1	1
GCF_000014785.1	2
GCF_000014805.1	10
GCF_000014825.1	2
GCF_000014845.1	7
GCF_000014865.1	3
GCF_000014885.1	8
GCF_000014905.1	2
GCF_000014925.1	6
GCF_000014985.1	1
GCF_000015025.1	1
GCF_000015045.1	4
GCF_000015065.1	14
GCF_000015085.1	3
GCF_000015105.1	1
GCF_000015125.1	2
GCF_000015185.1	8
GCF_000015245.1	8
GCF_000015305.1	2
GCF_000015325.1	3
GCF_000015345.1	3
GCF_000015365.1	3
GCF_000015385.1	4
GCF_000015405.1	2
GCF_000015445.1	2
GCF_000015465.1	5
GCF_000015485.1	5
GCF_000015545.1	3
GCF_000015565.1	3
GCF_000015605.1	4
GCF_000015625.1	4
GCF_000015645.1	1
GCF_000015665.1	1
GCF_000015685.1	1
GCF_000015745.1	10
GCF_000015845.1	10
GCF_000015865.1	4
GCF_000015905.1	4
GCF_000015925.1	4
GCF_000015965.1	1
GCF_000015985.1	4
GCF_000016005.1	2
GCF_000016045.1	7
GCF_000016065.1	8
GCF_000016085.1	1
GCF_000016105.1	3
GCF_000016145.1	1
GCF_000016185.1	4
GCF_000016245.1	8
GCF_000016265.1	3
GCF_000016285.1	4
GCF_000016305.1	8
GCF_000016325.1	7
GCF_000016345.1	1
GCF_000016365.1	2
GCF_000016405.1	4
GCF_000016425.1	3
GCF_000016445.1	7
GCF_000016505.1	7
GCF_000016545.1	3
GCF_000016565.1	4
GCF_000016585.1	8
GCF_000016645.1	6
GCF_000016665.1	2
GCF_000016685.1	6
GCF_000016705.1	1
GCF_000016725.1	2
GCF_000016745.1	2
GCF_000016805.1	6
GCF_000016825.1	6
GCF_000016845.1	3
GCF_000016865.1	6
GCF_000016885.1	5
GCF_000016905.1	4
GCF_000016925.1	1
GCF_000016945.1	7
GCF_000017005.1	4
GCF_000017025.1	8
GCF_000017045.1	8
GCF_000017065.1	9
GCF_000017085.1	5
GCF_000017105.1	1
GCF_000017125.1	6
GCF_000017145.1	3
GCF_000017205.1	4
GCF_000017245.1	6
GCF_000017265.1	1
GCF_000017285.1	8
GCF_000017305.1	4
GCF_000017325.1	10
GCF_000017405.1	4
GCF_000017425.1	13
GCF_000017465.2	3
GCF_000017505.1	2
GCF_000017545.1	2
GCF_000017565.1	1
GCF_000017605.1	2
GCF_000017645.1	2
GCF_000017685.1	2
GCF_000017705.1	11
GCF_000017725.2	3
GCF_000017765.1	7
GCF_000017785.1	3
GCF_000017805.1	2
GCF_000017845.1	2
GCF_000017865.1	1
GCF_000017885.4	7
GCF_000017985.1	7
GCF_000018005.1	3
GCF_000018025.1	12
GCF_000018045.1	7
GCF_000018065.1	1
GCF_000018085.1	7
GCF_000018125.1	6
GCF_000018145.1	2
GCF_000018185.1	4
GCF_000018205.1	1
GCF_000018245.1	1
GCF_000018265.1	3
GCF_000018285.1	11
GCF_000018325.1	8
GCF_000018385.1	7
GCF_000018405.1	1
GCF_000018425.1	2
GCF_000018445.1	6
GCF_000018505.1	5
GCF_000018525.1	3
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